OCA Atlas for 1U02

1U02

Structural Genomics

date

Jul 12, 2004

title

Crystal Structure Of Trehalose-6-Phosphate Phosphatase Relat

authors

N.R.Krishnamurthy, D.Kumaran, S.Swaminathan, S.K.Burley, New Yor Research Center For Structural Genomics (Nysgxrc)

compound

source

Molecule: Trehalose-6-Phosphate Phosphatase Related Protein
Chain: A
Engineered: Yes

Organism_scientific: Thermoplasma Acidophilum
Organism_taxid: 2303
Gene: Ta1209
Expression_system: Escherichia Coli
Expression_system_taxid: 562

symmetry

Space Group: C 1 2 1

R_factor

0.197

R_Free

0.216

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
117.995	45.056	53.391	90.00	90.65	90.00

method

X-Ray Diffraction

resolution

1.92 Å

ligand

GOL, MG, MSE, NA

enzyme

note

1U02 is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A	trehalose-phosphatase activi...

Primary reference

Crystal structure of trehalose-6-phosphate phosphatase-related protein: biochemical and biological implications., Rao KN, Kumaran D, Seetharaman J, Bonanno JB, Burley SK, Swaminathan S, Protein Sci. 2006 Jul;15(7):1735-44. PMID:16815921

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]

Biological Unit Coordinates (1u02.pdb1.gz) 40 Kb

LPC: Ligand-Protein Contacts for 1U02

CSU: Contacts of Structural Units for 1U02

Likely Quarternary Molecular Structure file(s) for 1U02

Structure Factors (172 Kb)

Retrieve 1U02 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1U02 from S2C, [Save to disk]

Re-refined 1u02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1U02 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1U02

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1U02, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1u02a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1u02] [1u02_A]

SWISS-PROT database: [Q9HIW7]

Domain organization of [Q9HIW7_THEAC] by SWISSPFAM

Other resources with information on 1U02

Community annotation for 1U02 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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