1UCF	Rna Binding Protein	date	Apr 11, 2003
title	The Crystal Structure Of Dj-1, A Protein Related To Male Fer Parkinson'S Disease
authors	K.Honbou, N.N.Suzuki, M.Horiuchi, T.Niki, T.Taira, H.Ariga, F.Inag
compound		source
Molecule: Rna-Binding Protein Regulatory Subunit Chain: A, B Synonym: Dj-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dj-1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p
symmetry	Space Group: P 31	R_factor 0.170 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.039 75.039 74.877 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.95 Å
related structures	by homologous chain: 1PDV, 1PDW
Gene Ontology	Chain Function Process Component A, B transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo... synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...
Primary reference	The crystal structure of DJ-1, a protein related to male fertility and Parkinson's disease., Honbou K, Suzuki NN, Horiuchi M, Niki T, Taira T, Ariga H, Inagaki F, J Biol Chem 2003 Aug 15;278(33):31380-4. Epub 2003 Jun 8. PMID:12796482

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (1ucf.pdb1.gz) 60 Kb CSU: Contacts of Structural Units for 1UCF Likely Quarternary Molecular Structure file(s) for 1UCF Structure Factors (378 Kb) Retrieve 1UCF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UCF from S2C, [Save to disk] Re-refined 1ucf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UCF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UCF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UCF, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ucfa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ucfb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ucf_A] [1ucf] [1ucf_B] SWISS-PROT database: [Q99497] Domain organization of [PARK7_HUMAN] by SWISSPFAM

Other resources with information on 1UCF

Community annotation for 1UCF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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