OCA Atlas for 1PDW

1PDW

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE

enzyme

related structures

by homologous chain: 1J42, 1UCF

Gene
Ontology

Chain	Function	Process	Component
H, A, D, C, E, B, F, G	transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo...	synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...

Primary reference

Crystal structure of human DJ-1, a protein associated with early onset Parkinson's disease., Tao X, Tong L, J Biol Chem 2003 Aug 15;278(33):31372-9. PMID:12761214

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]

Biological Unit Coordinates (1pdw.pdb1.gz) 61 Kb

Biological Unit Coordinates (1pdw.pdb2.gz) 62 Kb

Biological Unit Coordinates (1pdw.pdb3.gz) 63 Kb

Biological Unit Coordinates (1pdw.pdb4.gz) 64 Kb

LPC: Ligand-Protein Contacts for 1PDW

CSU: Contacts of Structural Units for 1PDW

Likely Quarternary Molecular Structure file(s) for 1PDW

Structure Factors (568 Kb)

Retrieve 1PDW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1PDW from S2C, [Save to disk]

Re-refined 1pdw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PDW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pdw] [1pdw_A] [1pdw_B] [1pdw_C] [1pdw_D] [1pdw_E] [1pdw_F] [1pdw_G] [1pdw_H]

SWISS-PROT database: [Q99497]

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