1UCF Rna Binding Protein date Apr 11, 2003
title The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson'S Disease
authors K.Honbou, N.N.Suzuki, M.Horiuchi, T.Niki, T.Taira, H.Ariga, F.Inagaki
compound source
Molecule: Rna-Binding Protein Regulatory Subunit
Chain: A, B
Synonym: Dj-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dj-1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p
symmetry Space Group: P 31
R_factor 0.170 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.039 75.039 74.877 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
related structures by homologous chain: 1PDV, 1PDW
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of DJ-1, a protein related to male fertility and Parkinson's disease., Honbou K, Suzuki NN, Horiuchi M, Niki T, Taira T, Ariga H, Inagaki F, J Biol Chem 2003 Aug 15;278(33):31380-4. Epub 2003 Jun 8. PMID:12796482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1ucf.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 1UCF
  • Likely Quarternary Molecular Structure file(s) for 1UCF
  • Structure Factors (378 Kb)
  • Retrieve 1UCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UCF from S2C, [Save to disk]
  • Re-refined 1ucf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UCF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UCF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ucfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ucfb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1ucf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ucf_A] [1ucf] [1ucf_B]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1UCF with the sequences similar proteins can be viewed for 1UCF's classification [PARK7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PARK7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1UCF
  • Community annotation for 1UCF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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