1J42 Rna Binding Protein date Feb 26, 2003
title Crystal Structure Of Human Dj-1
authors S.S.Cha
compound source
Molecule: Rna-Binding Protein Regulatory Subunit
Chain: A
Synonym: Dj-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 31 2 1
R_factor 0.228 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.075 75.075 75.158 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1PDW
Gene
Ontology
ChainFunctionProcessComponent
A
  • negative regulation of prote...

  • Primary referenceCrystal structures of human DJ-1 and Escherichia coli Hsp31, which share an evolutionarily conserved domain., Lee SJ, Kim SJ, Kim IK, Ko J, Jeong CS, Kim GH, Park C, Kang SO, Suh PG, Lee HS, Cha SS, J Biol Chem 2003 Nov 7;278(45):44552-9. Epub 2003 Aug 25. PMID:12939276
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1j42.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (1j42.pdb2.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1J42
  • Likely Quarternary Molecular Structure file(s) for 1J42
  • Structure Factors (123 Kb)
  • Retrieve 1J42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J42 from S2C, [Save to disk]
  • Re-refined 1j42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J42
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J42, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j42a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1j42 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j42] [1j42_A]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Other resources with information on 1J42
  • Community annotation for 1J42 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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