1V8K Structural Protein date Jan 09, 2004
title The Crystal Structure Of The Minimal Functional Domain Of Th Microtubule Destabilizer Kif2c Complexed With Mg-Amppnp
authors T.Ogawa, R.Nitta, Y.Okada, N.Hirokawa
compound source
Molecule: Kinesin-Like Protein Kif2c
Chain: A
Fragment: Residues 1-403
Synonym: Mitotic Centromere-Associated Kinesin, Mcak
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Kif2c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: C 2 2 2
R_factor 0.215 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.068 191.475 74.627 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand ANP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA common mechanism for microtubule destabilizers-M type kinesins stabilize curling of the protofilament using the class-specific neck and loops., Ogawa T, Nitta R, Okada Y, Hirokawa N, Cell 2004 Feb 20;116(4):591-602. PMID:14980225
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1v8k.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (1v8k.pdb2.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 1V8K
  • CSU: Contacts of Structural Units for 1V8K
  • Likely Quarternary Molecular Structure file(s) for 1V8K
  • Structure Factors (242 Kb)
  • Retrieve 1V8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V8K from S2C, [Save to disk]
  • Re-refined 1v8k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V8K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V8K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v8ka_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v8k] [1v8k_A]
  • SWISS-PROT database: [Q922S8]
  • Domain organization of [KIF2C_MOUSE] by SWISSPFAM
  • Domain found in 1V8K: [KISc ] by SMART
  • Other resources with information on 1V8K
  • Community annotation for 1V8K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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