1V9D Protein Binding date Jan 24, 2004
title Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
authors A.Shimada, M.Nyitrai, I.R.Vetter, D.Kuhlmann, B.Bugyi, S.Narumiya, M.A.Geeves, A.Wittinghofer
compound source
Molecule: Diaphanous Protein Homolog 1
Chain: A, B, C, D
Fragment: Core Fh2 Domain
Synonym: Diaphanous-Related Formin 1, Drf1, Mdia1, P140mdia;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: P 21 21 21
R_factor 0.236 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.430 124.521 229.404 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe core FH2 domain of diaphanous-related formins is an elongated actin binding protein that inhibits polymerization., Shimada A, Nyitrai M, Vetter IR, Kuhlmann D, Bugyi B, Narumiya S, Geeves MA, Wittinghofer A, Mol Cell 2004 Feb 27;13(4):511-22. PMID:14992721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (1v9d.pdb1.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 1V9D
  • CSU: Contacts of Structural Units for 1V9D
  • Likely Quarternary Molecular Structure file(s) for 1V9D
  • Structure Factors (577 Kb)
  • Retrieve 1V9D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V9D from S2C, [Save to disk]
  • Re-refined 1v9d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1V9D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V9D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V9D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v9da_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1v9db_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1v9dc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1v9dd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v9d_A] [1v9d_D] [1v9d_C] [1v9d] [1v9d_B]
  • SWISS-PROT database: [O08808]
  • Domain organization of [DIAP1_MOUSE] by SWISSPFAM
  • Domain found in 1V9D: [FH2 ] by SMART
    • Other resources with information on 1V9D
  • Community annotation for 1V9D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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