OCA Atlas for 1VCL

1VCL

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BTB, CA, CL, MG, PCA

enzyme

note

1VCL is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Crystal structure of the hemolytic lectin CEL-III isolated from the marine invertebrate Cucumaria echinata: implications of domain structure for its membrane pore-formation mechanism., Uchida T, Yamasaki T, Eto S, Sugawara H, Kurisu G, Nakagawa A, Kusunoki M, Hatakeyama T, J Biol Chem 2004 Aug 27;279(35):37133-41. Epub 2004 Jun 11. PMID:15194688

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]

Biological Unit Coordinates (1vcl.pdb1.gz) 136 Kb

Biological Unit Coordinates (1vcl.pdb2.gz) 136 Kb

LPC: Ligand-Protein Contacts for 1VCL

CSU: Contacts of Structural Units for 1VCL

Likely Quarternary Molecular Structure file(s) for 1VCL

Structure Factors (755 Kb)

Retrieve 1VCL in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1VCL from S2C, [Save to disk]

Re-refined 1vcl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VCL in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vcl] [1vcl_A] [1vcl_B]

SWISS-PROT database: [Q868M7]

Belongs to the haemolytic lectin, cel-iii (cel-iii) family

according to TCDB.

Domain found in 1VCL: [RICIN ] by SMART

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