1VGO		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BNG, RET, SO4	enzyme
Gene Ontology	Chain Function Process Component B, A ion channel activity
Primary reference	Crystal structures of archaerhodopsin-1 and -2: Common structural motif in archaeal light-driven proton pumps., Enami N, Yoshimura K, Murakami M, Okumura H, Ihara K, Kouyama T, J Mol Biol. 2006 May 5;358(3):675-85. Epub 2006 Mar 3. PMID:16540121

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (1vgo.pdb1.gz) 79 Kb LPC: Ligand-Protein Contacts for 1VGO CSU: Contacts of Structural Units for 1VGO Likely Quarternary Molecular Structure file(s) for 1VGO Structure Factors (205 Kb) Retrieve 1VGO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VGO from S2C, [Save to disk] Re-refined 1vgo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VGO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vgo] [1vgo_A] [1vgo_B] SWISS-PROT database: [P29563] Belongs to the ion-translocating microbial rhodopsin (mr) family according to TCDB. Domain found in 1VGO: [Bac_rhodopsin ] by SMART

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