1VGQ	Transferase	date	Apr 28, 2004
title	Formyl-Coa Transferase Mutant Asp169 To Ala
authors	S.Ricagno, S.Jonsson, N.G.Richards, Y.Lindqvist
compound		source
Molecule: Formyl-Coenzyme A Transferase Chain: A, B Synonym: Formyl-Coa Transferase Ec: 2.8.3.16 Engineered: Yes Mutation: Yes		Organism_scientific: Oxalobacter Formigenes Organism_taxid: 847 Gene: Frc Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet9a
symmetry	Space Group: I 4	R_factor 0.171 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 151.116 151.116 99.593 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.13 Å
ligand	CAO	enzyme	Transferase E.C.2.8.3.16 BRENDA
related structures	by homologous chain: 1P5H, 1VGR
Gene Ontology	Chain Function Process Component A, B
Primary reference	Kinetic and mechanistic characterization of the formyl-CoA transferase from Oxalobacter formigenes., Jonsson S, Ricagno S, Lindqvist Y, Richards NG, J Biol Chem 2004 Aug 20;279(34):36003-12. Epub 2004 Jun 21. PMID:15213226

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (1vgq.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 1VGQ CSU: Contacts of Structural Units for 1VGQ Likely Quarternary Molecular Structure file(s) for 1VGQ Structure Factors (509 Kb) Retrieve 1VGQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VGQ from S2C, [Save to disk] Re-refined 1vgq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VGQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VGQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VGQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vgqa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1vgqb_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vgq] [1vgq_A] [1vgq_B] SWISS-PROT database: [O06644] Domain organization of [FCTA_OXAFO] by SWISSPFAM

Other resources with information on 1VGQ

Community annotation for 1VGQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---