1VPS date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GAL, NAG, SIA enzyme
related structures by homologous chain: 1VPN
Gene
Ontology
ChainFunctionProcessComponent
E, D, B, A, C


Primary referenceHigh-resolution structure of a polyomavirus VP1-oligosaccharide complex: implications for assembly and receptor binding., Stehle T, Harrison SC, EMBO J. 1997 Aug 15;16(16):5139-48. PMID:9305654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (1vps.pdb1.gz) 269 Kb
  • Biological Unit Coordinates (1vps.pdb2.gz) 535 Kb
  • LPC: Ligand-Protein Contacts for 1VPS
  • CSU: Contacts of Structural Units for 1VPS
  • Likely Quarternary Molecular Structure file(s) for 1VPS
  • Structure Factors (1467 Kb)
  • Retrieve 1VPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VPS from S2C, [Save to disk]
  • Re-refined 1vps structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vps_D] [1vps_E] [1vps] [1vps_A] [1vps_B] [1vps_C]
  • SWISS-PROT database: [P49302]

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