1XDM Lyase date Sep 07, 2004
title Structure Of Human Aldolase B Associated With Hereditary Fructose Intolerance (A149p), At 291k
authors A.D.Malay, K.N.Allen, D.R.Tolan
compound source
Molecule: Fructose-Bisphosphate Aldolase B
Chain: A, B, C, D, W, X, Y, Z
Synonym: Liver-Type Aldolase
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldob, Aldb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5-Alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Ap
symmetry Space Group: P 21 21 2
R_factor 0.271 R_Free 0.319
length a length b length c angle alpha angle beta angle gamma
153.421 153.475 185.553 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand SO4 enzyme Lyase E.C. BRENDA
related structures by homologous chain: 1XFB
A, W, X, Y, B, Z, C, D

Primary referenceStructure of the thermolabile mutant aldolase B, A149P: molecular basis of hereditary fructose intolerance., Malay AD, Allen KN, Tolan DR, J Mol Biol. 2005 Mar 18;347(1):135-44. Epub 2005 Jan 20. PMID:15733923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (362 Kb) [Save to disk]
  • Biological Unit Coordinates (1xdm.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (1xdm.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (1xdm.pdb3.gz) 91 Kb
  • Biological Unit Coordinates (1xdm.pdb4.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 1XDM
  • CSU: Contacts of Structural Units for 1XDM
  • Likely Quarternary Molecular Structure file(s) for 1XDM
  • Structure Factors (669 Kb)
  • Retrieve 1XDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XDM from S2C, [Save to disk]
  • Re-refined 1xdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XDM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XDM, from MSDmotif at EBI
  • Fold representative 1xdm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xdm_C] [1xdm] [1xdm_D] [1xdm_X] [1xdm_W] [1xdm_Z] [1xdm_Y] [1xdm_A] [1xdm_B]
  • SWISS-PROT database: [P05062]
  • Domain organization of [ALDOB_HUMAN] by SWISSPFAM
  • Other resources with information on 1XDM
  • Community annotation for 1XDM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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