1Y7V X-ray structure of human acid-beta-glucosidase covalently bound to conduritol B epoxide date
authors Premkumar, L., Sawkar, A.R., Boldin-Adamsky, S., Toker, L., Silman, I., Kelly, J.W., Futerman, A.H., Sussman, J.L., ISPC, Israel.Structural.Proteomics.Center.
compound source
symmetry
R_factor
R_Free 0.28
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand INS, NAG, SO4 enzyme
related structures by homologous chain: 1OGS
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceX-ray structure of human acid-beta-glucosidase covalently bound to conduritol-B-epoxide. Implications for Gaucher disease., Premkumar L, Sawkar AR, Boldin-Adamsky S, Toker L, Silman I, Kelly JW, Futerman AH, Sussman JL, J Biol Chem 2005 Jun 24;280(25):23815-9. Epub 2005 Apr 6. PMID:15817452
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (1y7v.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (1y7v.pdb2.gz) 84 Kb
  • Biological Unit Coordinates (1y7v.pdb3.gz) 323 Kb
  • Biological Unit Coordinates (1y7v.pdb4.gz) 325 Kb
  • Biological Unit Coordinates (1y7v.pdb5.gz) 164 Kb
  • Biological Unit Coordinates (1y7v.pdb6.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 1Y7V
  • CSU: Contacts of Structural Units for 1Y7V
  • Likely Quarternary Molecular Structure file(s) for 1Y7V
  • Structure Factors (538 Kb)
  • Retrieve 1Y7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y7V from S2C, [Save to disk]
  • Re-refined 1y7v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y7V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y7V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y7v_B] [1y7v_A] [1y7v]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
  • Other resources with information on 1Y7V
  • Community annotation for 1Y7V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science