OCA Atlas for 1YE9

1YE9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

HDD

enzyme

related structures

by homologous chain: 1IPH

Gene
Ontology

Chain	Function	Process	Component
D, A, K, B, J, L, C, I
E, G, H, P, F, M, N, O

Primary reference

Characterization of a Large Subunit Catalase Truncated by Proteolytic Cleavage(,)., Chelikani P, Carpena X, Perez-Luque R, Donald LJ, Duckworth HW, Switala J, Fita I, Loewen PC, Biochemistry 2005 Apr 19;44(15):5597-5605. PMID:15823018

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (627 Kb) [Save to disk]

Biological Unit Coordinates (1ye9.pdb1.gz) 313 Kb

Biological Unit Coordinates (1ye9.pdb2.gz) 312 Kb

LPC: Ligand-Protein Contacts for 1YE9

CSU: Contacts of Structural Units for 1YE9

Likely Quarternary Molecular Structure file(s) for 1YE9

Structure Factors (868 Kb)

Retrieve 1YE9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YE9 from S2C, [Save to disk]

Re-refined 1ye9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YE9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ye9] [1ye9_A] [1ye9_B] [1ye9_C] [1ye9_D] [1ye9_E] [1ye9_F] [1ye9_G] [1ye9_H] [1ye9_I] [1ye9_J] [1ye9_K] [1ye9_L] [1ye9_M] [1ye9_N] [1ye9_O] [1ye9_P]

SWISS-PROT database: [P21179]

Domain found in 1YE9: [Catalase ] by SMART

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