1YFJ	Transferase Dna	date	Jan 02, 2005
title	T4dam In Complex With Adohcy And 15-Mer Oligonucleotide Show Specific And Specific Contact
authors	J.R.Horton, K.Liebert, S.Hattman, A.Jeltsch, X.Cheng
compound		source
Molecule: 5'-D(Tpcpapcpapgpgpaptpcpcptpgptpg Chain: 1, 2, 3, 4, 5, 6, 7, 8, 9, 0 Engineered: Yes		Synthetic: Yes Other_details: Synthesized By New England Biolabs
Molecule: Dna Adenine Methylase Chain: A, B, C, D, E, F Synonym: Deoxyadenosyl-Methyltransferase, M.Ecot4dam Ec: 2.1.1.72 Engineered: Yes		Organism_scientific: Enterobacteria Phage T4 Organism_taxid: 10665 Gene: Dam Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Gm 2971 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pjw2
symmetry	Space Group: P 21 21 21	R_factor 0.202 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.200 133.000 189.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.69 Å
ligand	CA, CL, SAH	enzyme	Transferase E.C.2.1.1.72 BRENDA
related structures	by homologous chain: 1Q0S
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase., Horton JR, Liebert K, Hattman S, Jeltsch A, Cheng X, Cell 2005 May 6;121(3):349-61. PMID:15882618

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk] Biological Unit Coordinates (1yfj.pdb1.gz) 60 Kb Biological Unit Coordinates (1yfj.pdb2.gz) 60 Kb Biological Unit Coordinates (1yfj.pdb3.gz) 60 Kb Biological Unit Coordinates (1yfj.pdb4.gz) 56 Kb Biological Unit Coordinates (1yfj.pdb5.gz) 53 Kb Biological Unit Coordinates (1yfj.pdb6.gz) 32 Kb LPC: Ligand-Protein Contacts for 1YFJ CSU: Contacts of Structural Units for 1YFJ Likely Quarternary Molecular Structure file(s) for 1YFJ Retrieve 1YFJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YFJ from S2C, [Save to disk]

View 1YFJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YFJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YFJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yfj_F] [1yfj] [1yfj_4] [1yfj_E] [1yfj_B] [1yfj_D] [1yfj_6] [1yfj_1] [1yfj_3] [1yfj_8] [1yfj_0] [1yfj_9] [1yfj_5] [1yfj_2] [1yfj_A] [1yfj_7] [1yfj_C] SWISS-PROT database: [P04392] Domain organization of [DMA_BPT4] by SWISSPFAM

Other resources with information on 1YFJ

Community annotation for 1YFJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---