1YGD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand HEM, OXY, ZNH enzyme
related structures by homologous chain: 1YEQ, 2HCO
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


    • D, B
  • peroxidase activity


    • Primary referenceCrystallographic Evidence for a New Ensemble of Ligand-Induced Allosteric Transitions in Hemoglobin: The T-to-T(High) Quaternary Transitions(,)., Kavanaugh JS, Rogers PH, Arnone A, Biochemistry 2005 Apr 26;44(16):6101-21. PMID:15835899
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1ygd.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1YGD
  • CSU: Contacts of Structural Units for 1YGD
  • Likely Quarternary Molecular Structure file(s) for 1YGD
  • Structure Factors (130 Kb)
  • Retrieve 1YGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YGD from S2C, [Save to disk]
  • Re-refined 1ygd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ygd] [1ygd_A] [1ygd_B] [1ygd_C] [1ygd_D]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science