1YSA Transcription Dna date Aug 09, 1993
title The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer Of Uninterrupted Alpha Helices: Crystal Structure Of The Protein-Dna Complex
authors T.E.Ellenberger, C.J.Brandl, K.Struhl, S.C.Harrison
compound source
Molecule: Dna (5'- D(Tptpcpcptpaptpgpapcptpcpaptpcpcpa Pgptpt)-3');
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'- D(Apapapcptpgpgpaptpgpapgptpcpaptpa Pgpgpa)-3');
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Gcn4)
Chain: C, D
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.130 88.540 59.240 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
related structures by homologous chain: 1DGC, 1KQL
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceThe GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex., Ellenberger TE, Brandl CJ, Struhl K, Harrison SC, Cell 1992 Dec 24;71(7):1223-37. PMID:1473154
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1ysa.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1YSA
  • Likely Quarternary Molecular Structure file(s) for 1YSA
  • Retrieve 1YSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YSA from S2C, [Save to disk]
    • View 1YSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YSA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YSA, from MSDmotif at EBI
  • Genome occurence of 1YSA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ysac_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ysad_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ysa_D] [1ysa_A] [1ysa_C] [1ysa] [1ysa_B]
  • SWISS-PROT database: [P03069]
  • Domain organization of [GCN4_YEAST] by SWISSPFAM
  • Domain found in 1YSA: [BRLZ ] by SMART
    • Other resources with information on 1YSA
  • Community annotation for 1YSA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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