1DGC Transcription Dna date Jul 15, 1993
title The X-Ray Structure Of The Gcn4-Bzip Bound To Atfcreb Site Dna Shows The Complex Depends On Dna Flexibility
authors P.Koenig, T.J.Richmond
compound source
Molecule: Dna (5'- D(Tpgpgpapgpaptpgpapcpgptpcpaptpcpt Pcpc)-3');
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Gcn4)
Chain: A

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 41 21 2
R_factor 0.216 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
58.660 58.660 86.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
related structures by homologous chain: 1EBO, 1TMZ, 1YSA

Primary referenceThe X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility., Konig P, Richmond TJ, J Mol Biol 1993 Sep 5;233(1):139-54. PMID:8377181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1dgc.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1DGC
  • Likely Quarternary Molecular Structure file(s) for 1DGC
  • Retrieve 1DGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DGC from S2C, [Save to disk]
  • View 1DGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DGC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DGC, from MSDmotif at EBI
  • Genome occurence of 1DGC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dgca_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1dgc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dgc_A] [1dgc] [1dgc_B]
  • SWISS-PROT database: [P03069]
  • Domain organization of [GCN4_YEAST] by SWISSPFAM
  • Domain found in 1DGC: [BRLZ ] by SMART
  • Other resources with information on 1DGC
  • Community annotation for 1DGC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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