1EBO CRYSTAL STRUCTURE OF THE EBOLA VIRUS MEMBRANE-FUSION SUBUNIT, GP2, FROM THE ENVELOPE GLYCOPROTEIN ECTODOMAIN date
authors Weissenhorn, W., Carfi, A., Lee, K.H., Skehel, J.J., Wiley, D.C.
compound source
symmetry
R_factor
R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand CL, ZN enzyme
related structures by homologous chain: 1DGC, 1FAV
Primary referenceCrystal structure of the Ebola virus membrane fusion subunit, GP2, from the envelope glycoprotein ectodomain., Weissenhorn W, Carfi A, Lee KH, Skehel JJ, Wiley DC, Mol Cell 1998 Nov;2(5):605-16. PMID:9844633
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (1ebo.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (1ebo.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (1ebo.pdb3.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 1EBO
  • CSU: Contacts of Structural Units for 1EBO
  • Likely Quarternary Molecular Structure file(s) for 1EBO
  • Retrieve 1EBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EBO from S2C, [Save to disk]
    • View 1EBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EBO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EBO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1eboa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ebob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1eboc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ebod_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1eboe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1ebof_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ebo_E] [1ebo_F] [1ebo] [1ebo_A] [1ebo_C] [1ebo_B] [1ebo_D]
  • SWISS-PROT database: [O11457]
  • Domain organization of [VGP_EBOG4] by SWISSPFAM
    • Other resources with information on 1EBO
  • Community annotation for 1EBO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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