2BO8 Transferase date Apr 08, 2005
title Dissection Of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
authors J.Flint, E.Taylor, M.Yang, D.N.Bolam, L.E.Tailford, C.Martinez-Fl E.J.Dodson, B.G.Davis, H.J.Gilbert, G.J.Davies
compound source
Molecule: Mannosylglycerate Synthase
Chain: A, B, C, D, E, F, G, H, I, J
Ec: 2.4.1.-
Engineered: Yes
Organism_scientific: Rhodothermus Marinus
Organism_taxid: 29549
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner (De3)
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 2
R_factor 0.195 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
405.094 161.430 108.708 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CL, GDX, MN enzyme Transferase E.C.2.4.1 BRENDA
related structures by homologous chain: 2BO6, 2BO7
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceStructural dissection and high-throughput screening of mannosylglycerate synthase., Flint J, Taylor E, Yang M, Bolam DN, Tailford LE, Martinez-Fleites C, Dodson EJ, Davis BG, Gilbert HJ, Davies GJ, Nat Struct Mol Biol. 2005 Jul;12(7):608-14. Epub 2005 Jun 12. PMID:15951819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (632 Kb) [Save to disk]
  • Biological Unit Coordinates (2bo8.pdb1.gz) 256 Kb
  • Biological Unit Coordinates (2bo8.pdb2.gz) 251 Kb
  • Biological Unit Coordinates (2bo8.pdb3.gz) 252 Kb
  • LPC: Ligand-Protein Contacts for 2BO8
  • CSU: Contacts of Structural Units for 2BO8
  • Likely Quarternary Molecular Structure file(s) for 2BO8
  • Structure Factors (1426 Kb)
  • Retrieve 2BO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BO8 from S2C, [Save to disk]
  • Re-refined 2bo8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BO8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BO8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bo8_G] [2bo8_I] [2bo8_B] [2bo8_D] [2bo8_C] [2bo8_E] [2bo8_F] [2bo8_A] [2bo8_H] [2bo8_J] [2bo8]
  • SWISS-PROT database: [Q9RFR0]
  • Domain organization of [Q9RFR0_RHOMR] by SWISSPFAM
  • Other resources with information on 2BO8
  • Community annotation for 2BO8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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