2C3Y Oxidoreductase date Oct 13, 2005
title Crystal Structure Of The Radical Form Of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus
authors C.Cavazza, C.Contreras-Martel, L.Pieulle, E.Chabriere, E.C.Hatch J.C.Fontecilla-Camps
compound source
Molecule: Pyruvate-Ferredoxin Oxidoreductase
Chain: A, B
Ec: 1.2.7.1
Other_details: Complexed With Ironsulfur Cluster, Thiamin Diphosphate, Crystal Soaked Overnight With Pyruvate
 Organism_scientific: Desulfovibrio Africanus
Organism_taxid: 873
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.081 145.639 211.619 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand CA, CO2, HTL, MG, SF4 enzyme Oxidoreductase E.C.1.2.7.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • pyruvate synthase activity


    • Primary referenceFlexibility of thiamine diphosphate revealed by kinetic crystallographic studies of the reaction of pyruvate-ferredoxin oxidoreductase with pyruvate., Cavazza C, Contreras-Martel C, Pieulle L, Chabriere E, Hatchikian EC, Fontecilla-Camps JC, Structure. 2006 Feb;14(2):217-24. PMID:16472741
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (2c3y.pdb1.gz) 409 Kb
  • LPC: Ligand-Protein Contacts for 2C3Y
  • CSU: Contacts of Structural Units for 2C3Y
  • Likely Quarternary Molecular Structure file(s) for 2C3Y
  • Structure Factors (1411 Kb)
  • Retrieve 2C3Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C3Y from S2C, [Save to disk]
  • Re-refined 2c3y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2C3Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2C3Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C3Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c3y] [2c3y_A] [2c3y_B]
  • SWISS-PROT database: [P94692]
  • Domain organization of [P94692_DESAF] by SWISSPFAM
  • Domain found in 2C3Y: [EKR ] by SMART
    • Other resources with information on 2C3Y
  • Community annotation for 2C3Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science