2CDO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AAL, CA, CL, EDO, GAL, MSE enzyme
note 2CDO is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


Primary referenceFamily 6 carbohydrate binding modules in beta-agarases display exquisite selectivity for the non-reducing termini of agarose chains., Henshaw J, Horne-Bitschy A, van Bueren AL, Money VA, Bolam DN, Czjzek M, Ekborg NA, Weiner RM, Hutcheson SW, Davies GJ, Boraston AB, Gilbert HJ, J Biol Chem. 2006 Jun 23;281(25):17099-107. Epub 2006 Apr 6. PMID:16601125
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (2cdo.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (2cdo.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (2cdo.pdb3.gz) 27 Kb
  • Biological Unit Coordinates (2cdo.pdb4.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 2CDO
  • CSU: Contacts of Structural Units for 2CDO
  • Likely Quarternary Molecular Structure file(s) for 2CDO
  • Structure Factors (739 Kb)
  • Retrieve 2CDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CDO from S2C, [Save to disk]
  • Re-refined 2cdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cdo] [2cdo_A] [2cdo_B] [2cdo_C] [2cdo_D]
  • SWISS-PROT database: [Q6DN99]
  • Domain found in 2CDO: [CBD_IV ] by SMART

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