2CJR	Viral Protein	date	Apr 06, 2006
title	Crystal Structure Of Oligomerization Domain Of Sars Coronavirus Nucleocapsid Protein.
authors	C.Y.Chen, C.D.Hsiao
compound		source
Molecule: Nucleocapsid Protein Chain: A, B, C, D, E, F, G, H Fragment: Residues 248-365 Synonym: Oligomerization Domain Of Sars Coronavirus, N Structural Protein, Nc; Engineered: Yes		Organism_scientific: Sars Coronavirus Organism_taxid: 229993 Strain: Tw1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_plasmid: Pet6h
symmetry	Space Group: C 1 2 1	R_factor 0.256 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 159.423 84.203 105.177 90.00 131.18 90.00
method	X-Ray Diffraction	resolution	2.50 Å
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Structure of the SARS coronavirus nucleocapsid protein RNA-binding dimerization domain suggests a mechanism for helical packaging of viral RNA., Chen CY, Chang CK, Chang YW, Sue SC, Bai HI, Riang L, Hsiao CD, Huang TH, J Mol Biol. 2007 May 11;368(4):1075-86. Epub 2007 Mar 2. PMID:17379242

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk] Biological Unit Coordinates (2cjr.pdb1.gz) 43 Kb Biological Unit Coordinates (2cjr.pdb2.gz) 42 Kb Biological Unit Coordinates (2cjr.pdb3.gz) 41 Kb Biological Unit Coordinates (2cjr.pdb4.gz) 40 Kb CSU: Contacts of Structural Units for 2CJR Likely Quarternary Molecular Structure file(s) for 2CJR Structure Factors (381 Kb) Retrieve 2CJR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CJR from S2C, [Save to disk] Re-refined 2cjr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CJR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CJR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CJR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cjr_H] [2cjr_G] [2cjr_E] [2cjr_A] [2cjr_B] [2cjr] [2cjr_C] [2cjr_F] [2cjr_D] SWISS-PROT database: [P59595] Domain organization of [NCAP_CVHSA] by SWISSPFAM

Other resources with information on 2CJR

Community annotation for 2CJR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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