2CN3 Hydrolase date May 17, 2006
title Crystal Structures Of Clostridium Thermocellum Xyloglucanase
authors C.Martinez-Fleites, E.J.Taylor, C.I.P.D.Guerreiro, J.A.M.Prates L.M.A.Ferreira, C.M.G.A.Fontes, M.J.Baumann, H.Brumer, G.J.Davi
compound source
Molecule: Beta-1,4-Xyloglucan Hydrolase
Chain: A, B
Fragment: Residues 28-764
Synonym: Xyloglucanase
Ec: 3.2.1.151
Engineered: Yes
Mutation: Yes
Organism_scientific: Clostridium Thermocellum
Organism_taxid: 1515
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner
Expression_system_vector: Pet21
symmetry Space Group: P 43 21 2
R_factor 0.178 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.440 141.440 193.393 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand BGC, CA, GAL, GLC, XYS enzyme Hydrolase E.C.3.2.1.151 BRENDA
Primary referenceCrystal structures of Clostridium thermocellum xyloglucanase, XGH74A, reveal the structural basis for xyloglucan recognition and degradation., Martinez-Fleites C, Guerreiro CI, Baumann MJ, Taylor EJ, Prates JA, Ferreira LM, Fontes CM, Brumer H, Davies GJ, J Biol Chem. 2006 Aug 25;281(34):24922-33. Epub 2006 Jun 13. PMID:16772298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (2cn3.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (2cn3.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 2CN3
  • CSU: Contacts of Structural Units for 2CN3
  • Likely Quarternary Molecular Structure file(s) for 2CN3
  • Structure Factors (1122 Kb)
  • Retrieve 2CN3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CN3 from S2C, [Save to disk]
  • Re-refined 2cn3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CN3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CN3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CN3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cn3_B] [2cn3] [2cn3_A]
  • SWISS-PROT database: [Q70DK5]
  • Domain organization of [Q70DK5_CLOTM] by SWISSPFAM
  • Other resources with information on 2CN3
  • Community annotation for 2CN3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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