2DDE Antibiotic date Jan 27, 2006
title Structure Of Cinnamycin Complexed With Lysophosphatidylethan
authors K.Hosoda, M.Ohya, T.Kohno, T.Maeda, S.Endo, K.Wakamatsu
compound source
Molecule: Lantibiotic Cinnamycin
Chain: A
Synonym: Lanthiopeptin, Lantibiotic Ro 09- 0198
 Organism_scientific: Streptomyces Griseoverticillatus
Organism_taxid: 68215
methodSolution NMR
ligand BH2, DAL, DBB, LSP enzyme
Primary referenceStructure determination of an immunopotentiator peptide, cinnamycin, complexed with lysophosphatidylethanolamine by 1H-NMR1., Hosoda K, Ohya M, Kohno T, Maeda T, Endo S, Wakamatsu K, J Biochem (Tokyo). 1996 Feb;119(2):226-30. PMID:8882709
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2dde.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 2DDE
  • CSU: Contacts of Structural Units for 2DDE
  • Retrieve 2DDE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DDE from S2C, [Save to disk]
    • View 2DDE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DDE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DDE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dde] [2dde_A]
  • SWISS-PROT database: [P29827]
  • Domain organization of [CINA_STRGV] by SWISSPFAM
    • Other resources with information on 2DDE
  • Community annotation for 2DDE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science