2DE0 Crystal structure of human alpha 1,6-fucosyltransferase, FUT8 date
authors Taniguchi, N., Ihara, H., Nakagawa, A.
compound source
R_Free 0.28336
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.61

Primary referenceCrystal Structure of Mammalian {alpha}1,6-Fucosyltransferase, FUT8., Ihara H, Ikeda Y, Toma S, Wang X, Suzuki T, Gu J, Miyoshi E, Tsukihara T, Honke K, Matsumoto A, Nakagawa A, Taniguchi N, Glycobiology. 2006 Dec 15;. PMID:17172260
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (2de0.pdb1.gz) 156 Kb
  • CSU: Contacts of Structural Units for 2DE0
  • Likely Quarternary Molecular Structure file(s) for 2DE0
  • Structure Factors (237 Kb)
  • Retrieve 2DE0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DE0 from S2C, [Save to disk]
  • Re-refined 2de0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DE0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DE0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DE0, from MSDmotif at EBI
  • Fold representative 2de0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2de0] [2de0_X]
  • SWISS-PROT database: [Q9BYC5]
  • Domain organization of [FUT8_HUMAN] by SWISSPFAM
  • Domain found in 2DE0: [SH3 ] by SMART
  • Other resources with information on 2DE0
  • Community annotation for 2DE0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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