OCA Atlas for 2DGE

2DGE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

HEM, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, B, A, C

Primary reference

Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana., Chida H, Yokoyama T, Kawai F, Nakazawa A, Akazaki H, Takayama Y, Hirano T, Suruga K, Satoh T, Yamada S, Kawachi R, Unzai S, Nishio T, Park SY, Oku T, FEBS Lett. 2006 Jun 26;580(15):3763-8. Epub 2006 Jun 9. PMID:16777100

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]

Biological Unit Coordinates (2dge.pdb1.gz) 71 Kb

Biological Unit Coordinates (2dge.pdb2.gz) 71 Kb

Biological Unit Coordinates (2dge.pdb3.gz) 19 Kb

Biological Unit Coordinates (2dge.pdb4.gz) 20 Kb

Biological Unit Coordinates (2dge.pdb5.gz) 20 Kb

Biological Unit Coordinates (2dge.pdb6.gz) 19 Kb

LPC: Ligand-Protein Contacts for 2DGE

CSU: Contacts of Structural Units for 2DGE

Likely Quarternary Molecular Structure file(s) for 2DGE

Structure Factors (848 Kb)

Retrieve 2DGE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2DGE from S2C, [Save to disk]

Re-refined 2dge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DGE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dge] [2dge_A] [2dge_B] [2dge_C] [2dge_D]

SWISS-PROT database: [Q93VA3]

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