2DYL	Transferase	date	Sep 15, 2006
title	Crystal Structure Of Human Mitogen-Activated Protein Kinase Activated Mutant (S287d, T291d)
authors	M.Kukimoto-Niino, T.Takagi, T.Kaminishi, T.Uchikubo-Kamo, T.Tera O.Matsuzaki, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase Chain: A Fragment: Kinase Domain, Residues 101-405 Synonym: Mitogen-Activated Protein Kinase Kinase 7 Gamma 1, Kinase Kinase 7, Mapkk 7, Mapkerk Kinase 7, Jnk-Activating C-Jun N-Terminal Kinase Kinase 2, Jnk Kinase 2, Jnkk 2; Ec: 2.7.12.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system_vector_type: Plasmid Expression_system_plasmid: Px060911-21 Other_details: Cell Free Protein Synthesis
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.552 69.635 84.035 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.45 Å
ligand		enzyme	Transferase E.C.2.7.12.2 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (2dyl.pdb1.gz) 45 Kb CSU: Contacts of Structural Units for 2DYL Likely Quarternary Molecular Structure file(s) for 2DYL Structure Factors (110 Kb) Retrieve 2DYL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DYL from S2C, [Save to disk] Re-refined 2dyl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DYL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DYL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DYL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dyl_A] [2dyl] SWISS-PROT database: [O14733] Domain organization of [MP2K7_HUMAN] by SWISSPFAM Domain found in 2DYL: [S_TKc ] by SMART

Other resources with information on 2DYL

Community annotation for 2DYL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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