2EBJ Crystal structure of pyrrolidone carboxyl peptidase from Thermus thermophilus date
authors Kumarevel, T.S., Karthe, P., Agari, Y., Kuramitsu, S., Yokoyama, S., RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.
compound source
symmetry
R_factor
R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (2ebj.pdb1.gz) 126 Kb
  • CSU: Contacts of Structural Units for 2EBJ
  • Likely Quarternary Molecular Structure file(s) for 2EBJ
  • Structure Factors (533 Kb)
  • Retrieve 2EBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EBJ from S2C, [Save to disk]
  • Re-refined 2ebj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2EBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EBJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EBJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ebj_B] [2ebj_A] [2ebj]
  • SWISS-PROT database: [Q5SJW4]
  • Domain organization of [Q5SJW4_THET8] by SWISSPFAM
  • Other resources with information on 2EBJ
  • Community annotation for 2EBJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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