2EBJ	Hydrolase	date	Feb 08, 2007
title	Crystal Structure Of Pyrrolidone Carboxyl Peptidase From The Thermophilus
authors	T.S.Kumarevel, P.Karthe, Y.Agari, S.Kuramitsu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Pyrrolidone Carboxyl Peptidase Chain: A, B Ec: 3.4.19.3 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Ttha0888 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-11a
symmetry	Space Group: C 2 2 21	R_factor 0.228 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.913 118.382 143.581 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand		enzyme	Hydrolase E.C.3.4.19.3 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (2ebj.pdb1.gz) 123 Kb CSU: Contacts of Structural Units for 2EBJ Likely Quarternary Molecular Structure file(s) for 2EBJ Structure Factors (533 Kb) Retrieve 2EBJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2EBJ from S2C, [Save to disk] Re-refined 2ebj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2EBJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2EBJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2EBJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ebj_B] [2ebj_A] [2ebj] SWISS-PROT database: [Q5SJW4] Domain organization of [Q5SJW4_THET8] by SWISSPFAM

Other resources with information on 2EBJ

Community annotation for 2EBJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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