2F3T Transferase date Nov 22, 2005
title Crystal Structure Of E.Coli Guanylate Kinase In Complex With Ganciclovir Monophosphate
authors G.Hible, J.Cherfils
compound source
Molecule: Guanylate Kinase
Chain: A, B, C, D, E, F
Synonym: Gmp Kinase
Ec: 2.7.4.8
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Gmk, Spor
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bli5
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24a
symmetry Space Group: P 41 21 2
R_factor 0.268 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.753 107.753 272.663 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.16 Å
ligand LGP enzyme Transferase E.C.2.7.4.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • guanylate kinase activity


  • Primary referenceCrystal structures of GMP kinase in complex with ganciclovir monophosphate and Ap5G., Hible G, Daalova P, Gilles AM, Cherfils J, Biochimie. 2006 Apr 27;. PMID:16690197
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (2f3t.pdb1.gz) 197 Kb
  • LPC: Ligand-Protein Contacts for 2F3T
  • CSU: Contacts of Structural Units for 2F3T
  • Likely Quarternary Molecular Structure file(s) for 2F3T
  • Structure Factors (328 Kb)
  • Retrieve 2F3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F3T from S2C, [Save to disk]
  • Re-refined 2f3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F3T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F3T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f3t_F] [2f3t_A] [2f3t_B] [2f3t_D] [2f3t_E] [2f3t_C] [2f3t]
  • SWISS-PROT database: [P60546]
  • Domain organization of [KGUA_ECOLI] by SWISSPFAM
  • Domain found in 2F3T: [GuKc ] by SMART
  • Other resources with information on 2F3T
  • Community annotation for 2F3T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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