2F5X Transport Protein date Nov 28, 2005
title Structure Of Periplasmic Binding Protein Bugd
authors I.Huvent, H.Belrhali, R.Antoine, C.Bompard, F.Jacob-Dubuisson, V.Villeret
compound source
Molecule: Bugd
Chain: A, B, C
Fragment: Residues 26-325
Engineered: Yes
 Organism_scientific: Bordetella Pertussis Tohama I
Organism_taxid: 257313
Strain: Tohama I
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30
symmetry Space Group: P 21 21 21
R_factor 0.140 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.670 76.420 260.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand ASP, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal Structure of Bordetella pertussis BugD Solute Receptor Unveils the Basis of Ligand Binding in a New Family of Periplasmic Binding Proteins., Huvent I, Belrhali H, Antoine R, Bompard C, Locht C, Jacob-Dubuisson F, Villeret V, J Mol Biol. 2005 Dec 21;. PMID:16403514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk]
  • Biological Unit Coordinates (2f5x.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (2f5x.pdb2.gz) 109 Kb
  • Biological Unit Coordinates (2f5x.pdb3.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 2F5X
  • CSU: Contacts of Structural Units for 2F5X
  • Likely Quarternary Molecular Structure file(s) for 2F5X
  • Structure Factors (735 Kb)
  • Retrieve 2F5X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F5X from S2C, [Save to disk]
  • Re-refined 2f5x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2F5X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2F5X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F5X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f5x_C] [2f5x_B] [2f5x] [2f5x_A]
  • SWISS-PROT database: [Q7VTS1]
  • Domain organization of [Q7VTS1_BORPE] by SWISSPFAM
    • Other resources with information on 2F5X
  • Community annotation for 2F5X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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