2F7F Transferase date Nov 30, 2005
title Crystal Structure Of Enterococcus Faecalis Putative Nicotina Phosphoribosyltransferase, New York Structural Genomics Con
authors Y.Patskovsky, S.C.Almo, S.K.Burley, New York Sgx Research Cente Structural Genomics (Nysgxrc)
compound source
Molecule: Nicotinate Phosphoribosyltransferase, Putative
Chain: A
Ec: 2.4.2.11
Engineered: Yes
Organism_scientific: Enterococcus Faecalis
Organism_taxid: 226185
Strain: V583
Gene: Ef2626
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: I 2 2 2
R_factor 0.171 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.325 110.627 154.189 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand DPO, GOL, NIO, SO4 enzyme Transferase E.C.2.4.2.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (2f7f.pdb1.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 2F7F
  • CSU: Contacts of Structural Units for 2F7F
  • Likely Quarternary Molecular Structure file(s) for 2F7F
  • Structure Factors (342 Kb)
  • Retrieve 2F7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F7F from S2C, [Save to disk]
  • Re-refined 2f7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F7F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F7F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f7f] [2f7f_A]
  • SWISS-PROT database: [Q830Y8]
  • Domain organization of [Q830Y8_ENTFA] by SWISSPFAM
  • Other resources with information on 2F7F
  • Community annotation for 2F7F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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