2GBL Circadian Clock Protein, Transferase date Mar 10, 2006
title Crystal Structure Of Full Length Circadian Clock Protein Kai Phosphorylation Sites
authors R.Pattanayek, D.R.Williams, S.Pattanayek, Y.Xu, T.Mori, C.H.Johns P.L.Stewart, M.Egli
compound source
Molecule: Circadian Clock Protein Kinase Kaic
Chain: A, B, E, F
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Synechococcus Elongatus
Organism_taxid: 1140
Strain: Pcc 7942
Gene: Kaic
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3

Molecule: Circadian Clock Protein Kinase Kaic
Chain: C, D
Ec: 2.7.1.37
Engineered: Yes

Organism_scientific: Synechococcus Elongatus
Organism_taxid: 1140
Strain: Pcc 7942
Gene: Kaic
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.873 135.576 204.951 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ATP, MG, SEP, TPO enzyme Transferase E.C.2.7.1.37 BRENDA
note 2GBL (Molecule of the Month:pdb97)
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • protein serine/threonine kin...
  • protein serine/threonine/tyr...


  • Primary referenceAnalysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods., Pattanayek R, Williams DR, Pattanayek S, Xu Y, Mori T, Johnson CH, Stewart PL, Egli M, EMBO J. 2006 May 3;25(9):2017-28. Epub 2006 Apr 20. PMID:16628225
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (495 Kb) [Save to disk]
  • Biological Unit Coordinates (2gbl.pdb1.gz) 475 Kb
  • LPC: Ligand-Protein Contacts for 2GBL
  • CSU: Contacts of Structural Units for 2GBL
  • Likely Quarternary Molecular Structure file(s) for 2GBL
  • Structure Factors (972 Kb)
  • Retrieve 2GBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GBL from S2C, [Save to disk]
  • Re-refined 2gbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GBL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gbl_C] [2gbl] [2gbl_F] [2gbl_E] [2gbl_B] [2gbl_A] [2gbl_D]
  • SWISS-PROT database: [Q79PF4]
  • Domain organization of [KAIC_SYNE7] by SWISSPFAM
  • Other resources with information on 2GBL
  • Community annotation for 2GBL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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