2GGD	Transferase	date	Mar 23, 2006
title	Cp4 Epsp Synthase Ala100gly Liganded With S3p And Glyphosate
authors	E.Schonbrunn, T.Funke
compound		source
Molecule: 3-Phosphoshikimate 1-Carboxyvinyltransferase Chain: A Synonym: 5-Enolpyruvylshikimate-3-Phosphate Synthase, Epsp Epsps; Ec: 2.5.1.19 Engineered: Yes Mutation: Yes		Organism_scientific: Agrobacterium Sp. Organism_taxid: 268951 Strain: Cp4 Gene: Aroa Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: P 1 21 1	R_factor 0.148 R_Free 0.174
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.172 44.719 76.959 90.00 106.01 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	GPJ, S3P	enzyme	Transferase E.C.2.5.1.19 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Molecular basis for the herbicide resistance of Roundup Ready crops., Funke T, Han H, Healy-Fried ML, Fischer M, Schonbrunn E, Proc Natl Acad Sci U S A. 2006 Aug 17;. PMID:16916934

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (2ggd.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 2GGD CSU: Contacts of Structural Units for 2GGD Likely Quarternary Molecular Structure file(s) for 2GGD Structure Factors (647 Kb) Retrieve 2GGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GGD from S2C, [Save to disk] Re-refined 2ggd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GGD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GGD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GGD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ggd_A] [2ggd] SWISS-PROT database: [Q9R4E4] Domain organization of [AROA_AGRSC] by SWISSPFAM

Other resources with information on 2GGD

Community annotation for 2GGD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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