2GO5 Translation Rna date Apr 12, 2006
title Structure Of Signal Recognition Particle Receptor (Sr) In Complex With Signal Recognition Particle (Srp) And Ribosome Nascent Chain Complex
authors M.Halic, M.Gartmann, O.Schlenker, T.Mielke, M.R.Pool, I.Sinning, R.Beckmann
compound source
Molecule: Srp Rna
Chain: A
Organism_scientific: Canis Sp.
Organism_taxid: 9616

Molecule: Ribosomal Rna
Chain: 9

Organism_scientific: Triticum Sp.
Organism_taxid: 4569

Molecule: Signal Recognition Particle 19 Kda Protein (Srp19);
Chain: B
Engineered: Yes

Organism_scientific: Canis Sp.
Organism_taxid: 9616

Molecule: Signal Recognition Particle 54 Kda Protein (Srp54);
Chain: W
Engineered: Yes

Organism_scientific: Canis Sp.
Organism_taxid: 9616

Molecule: Signal Recognition Particle Receptor Alpha Subunit (Sr A);
Chain: 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Signal Recognition Particle Receptor Beta Subunit (Sr B);
Chain: 2
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Ribosomal Protein L35
Chain: 5
Engineered: Yes

Organism_scientific: Triticum Sp.
Organism_taxid: 4569

Molecule: Ribosomal Protein L23
Chain: 4
Engineered: Yes

Organism_scientific: Triticum Sp.
Organism_taxid: 4569

Molecule: Ribosomal Protein L31
Chain: 6
Engineered: Yes

Organism_scientific: Triticum Sp.
Organism_taxid: 4569
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.40 Å
Gene
Ontology
ChainFunctionProcessComponent
1


4


5


6


B


W


Primary referenceSignal recognition particle receptor exposes the ribosomal translocon binding site., Halic M, Gartmann M, Schlenker O, Mielke T, Pool MR, Sinning I, Beckmann R, Science. 2006 May 5;312(5774):745-7. PMID:16675701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (2go5.pdb1.gz) 211 Kb
  • CSU: Contacts of Structural Units for 2GO5
  • Likely Quarternary Molecular Structure file(s) for 2GO5
  • Retrieve 2GO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GO5 from S2C, [Save to disk]
  • View 2GO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GO5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GO5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2go5_5] [2go5_W] [2go5_2] [2go5_9] [2go5_B] [2go5_A] [2go5] [2go5_6] [2go5_4] [2go5_1]
  • SWISS-PROT database: [O81229] [Q5XLD9] [Q8L805] [P61010] [P47758] [P08240]
  • Domain organization of [O81229_MAIZE] [Q5XLD9_MAIZE] [RL35_WHEAT] [SRP54_CANFA] [SRPRB_MOUSE] [SRPR_HUMAN] by SWISSPFAM
  • Domains found in 2GO5: [Ribosomal_L31e] [small_GTPase ] by SMART
  • Other resources with information on 2GO5
  • Community annotation for 2GO5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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