2GP5	Metal Binding Protein	date	Apr 16, 2006
title	Crystal Structure Of Catalytic Core Domain Of Jmjd2a Complex Alpha-Ketoglutarate
authors	Z.Chen, J.Zang, J.Whetstine, X.Hong, F.Davrazou, T.G.Kutateladze, M.Simpson, S.Dai, J.Hagman, Y.Shi, G.Zhang
compound		source
Molecule: Jumonji Domain-Containing Protein 2a Chain: A, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jmjd2a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex 4t2
symmetry	Space Group: P 21 21 2	R_factor 0.236 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.107 149.524 57.028 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.28 Å
ligand	AKG, FE2, ZN	enzyme
Primary reference	Structural insights into histone demethylation by JMJD2 family members., Chen Z, Zang J, Whetstine J, Hong X, Davrazou F, Kutateladze TG, Simpson M, Mao Q, Pan CH, Dai S, Hagman J, Hansen K, Shi Y, Zhang G, Cell. 2006 May 19;125(4):691-702. Epub 2006 May 4. PMID:16677698

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (2gp5.pdb1.gz) 61 Kb Biological Unit Coordinates (2gp5.pdb2.gz) 60 Kb LPC: Ligand-Protein Contacts for 2GP5 CSU: Contacts of Structural Units for 2GP5 Likely Quarternary Molecular Structure file(s) for 2GP5 Structure Factors (394 Kb) Retrieve 2GP5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GP5 from S2C, [Save to disk] Re-refined 2gp5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GP5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GP5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GP5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gp5] [2gp5_B] [2gp5_A] SWISS-PROT database: [O75164] Domain organization of [KDM4A_HUMAN] by SWISSPFAM Domains found in 2GP5: [JmjC] [JmjN ] by SMART

Other resources with information on 2GP5

Community annotation for 2GP5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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