2GWS Transferase Dna date May 05, 2006
title Crystal Structure Of Human Dna Polymerase Lambda With A Gg In The Primer Terminus
authors M.Garcia-Diaz, A.J.Picher, K.Bebenek, L.C.Pedersen, T.A.Kunkel, L
compound source
Molecule: 5'-D(Cpgpgpcpapgpcpgpcpapc)-3'
Chain: T, F, J, N
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Gptpgpcpgpg)-3'
Chain: P, G, K, R
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Pgpcpcpg)-3'
Chain: D, H, L, Q
Engineered: Yes

Synthetic: Yes

Molecule: Dna Polymerase Lambda
Chain: A, E, I, M
Synonym: Pol Lambda, Dna Polymerase Kappa, Dna Polymerase B Beta2;
Ec: 2.7.7.7, 4.2.99.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poll
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.209 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
192.374 98.268 104.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CAC, CL, EDO, MG, NA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, M, I, E


Primary referencePromiscuous mismatch extension by human DNA polymerase lambda., Picher AJ, Garcia-Diaz M, Bebenek K, Pedersen LC, Kunkel TA, Blanco L, Nucleic Acids Res. 2006 Jun 28;34(11):3259-66. Print 2006. PMID:16807316
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (2gws.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (2gws.pdb2.gz) 62 Kb
  • Biological Unit Coordinates (2gws.pdb3.gz) 64 Kb
  • Biological Unit Coordinates (2gws.pdb4.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2GWS
  • CSU: Contacts of Structural Units for 2GWS
  • Likely Quarternary Molecular Structure file(s) for 2GWS
  • Structure Factors (1118 Kb)
  • Retrieve 2GWS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GWS from S2C, [Save to disk]
  • Re-refined 2gws structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GWS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GWS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GWS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gws_T] [2gws_A] [2gws] [2gws_P] [2gws_I] [2gws_H] [2gws_Q] [2gws_K] [2gws_J] [2gws_L] [2gws_D] [2gws_M] [2gws_E] [2gws_F] [2gws_N] [2gws_G] [2gws_R]
  • SWISS-PROT database: [Q9UGP5]
  • Domain organization of [DPOLL_HUMAN] by SWISSPFAM
  • Domains found in 2GWS: [HhH1] [POLXc ] by SMART
  • Other resources with information on 2GWS
  • Community annotation for 2GWS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science