2H47 Oxidoreductase Electron Transport date May 23, 2006
title Crystal Structure Of An Electron Transfer Complex Between Ar Amine Dephydrogenase And Azurin From Alcaligenes Faecalis (
authors N.Sukumar, Z.Chen, D.Leys, N.S.Scrutton, D.Ferrati, A.Merli, G.L.R H.D.Bellamy, A.Chistoserdov, V.L.Davidson, F.S.Mathews
compound source
Molecule: Aromatic Amine Dehydrogenase
Chain: A, D, F, H
Ec: 1.4.99.4
Organism_scientific: Alcaligenes Faecalis
Organism_taxid: 511
Strain: Ifo 14479

Molecule: Aromatic Amine Dehydrogenase
Chain: B, E, G, I
Ec: 1.4.99.4

Organism_scientific: Alcaligenes Faecalis
Organism_taxid: 511
Strain: Ifo 14479

Molecule: Azurin
Chain: C

Organism_scientific: Alcaligenes Faecalis
Organism_taxid: 511
Strain: Ifo 14479
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.505 124.612 189.874 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CU, TRQ enzyme Oxidoreductase E.C.1.4.99.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C
  • electron transfer activity


  • E, B, I, G


    F, A, H, D


    Primary referenceCrystal Structure of an Electron Transfer Complex between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes faecalis(,)., Sukumar N, Chen ZW, Ferrari D, Merli A, Rossi GL, Bellamy HD, Chistoserdov A, Davidson VL, Mathews FS, Biochemistry. 2006 Nov 14;45(45):13500-13510. PMID:17087503
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk]
  • Biological Unit Coordinates (2h47.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (2h47.pdb2.gz) 83 Kb
  • Biological Unit Coordinates (2h47.pdb3.gz) 83 Kb
  • Biological Unit Coordinates (2h47.pdb4.gz) 83 Kb
  • Biological Unit Coordinates (2h47.pdb5.gz) 180 Kb
  • Biological Unit Coordinates (2h47.pdb6.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 2H47
  • CSU: Contacts of Structural Units for 2H47
  • Likely Quarternary Molecular Structure file(s) for 2H47
  • Structure Factors (452 Kb)
  • Retrieve 2H47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H47 from S2C, [Save to disk]
  • Re-refined 2h47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H47
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H47, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h47] [2h47_D] [2h47_F] [2h47_G] [2h47_C] [2h47_B] [2h47_I] [2h47_A] [2h47_H] [2h47_E]
  • SWISS-PROT database: [P84887] [P84888] [P00281]
  • Domain organization of [AAUA_ALCFA] [AAUB_ALCFA] [AZUR_ALCFA] by SWISSPFAM
  • Other resources with information on 2H47
  • Community annotation for 2H47 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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