2HBJ	Hydrolase, Gene Regulation	date	Jun 14, 2006
title	Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Rev Interplay Between The Active Site And The Hrdc Domain
authors	S.F.Midtgaard, J.Assenholt, A.T.Jonstrup, L.B.Van, T.H.Jensen, D.E.Brodersen
compound		source
Molecule: Exosome Complex Exonuclease Rrp6 Chain: A Fragment: Rrp6p Central Fragment, Residues 129-536 Synonym: Ribosomal Rna- Processing Protein 6 Ec: 3.1.13.- Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rrp6 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30 Eklic
symmetry	Space Group: P 31 2 1	R_factor 0.232 R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.135 110.135 80.169 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand		enzyme	Hydrolase E.C.3.1.13 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain., Midtgaard SF, Assenholt J, Jonstrup AT, Van LB, Jensen TH, Brodersen DE, Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):11898-903. Epub 2006 Aug 1. PMID:16882719

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (2hbj.pdb1.gz) 68 Kb CSU: Contacts of Structural Units for 2HBJ Likely Quarternary Molecular Structure file(s) for 2HBJ Structure Factors (259 Kb) Retrieve 2HBJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HBJ from S2C, [Save to disk] Re-refined 2hbj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HBJ in 3D

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Visual 3D analysis of 2HBJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HBJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hbj] [2hbj_A] SWISS-PROT database: [Q12149] Domain organization of [RRP6_YEAST] by SWISSPFAM Domains found in 2HBJ: [35EXOc] [HRDC ] by SMART

Other resources with information on 2HBJ

Community annotation for 2HBJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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