2HOD	Blood Clotting Peptide	date	Jul 14, 2006
title	Crystal Structure Of Fragment D From Human Fibrinogen Comple Gly-Hydroxypro-Arg-Pro-Amide
authors	R.F.Doolittle, J.M.Kollman, A.Chen, L.Pandi
compound		source
Molecule: Fibrinogen Alpha Chain Chain: A, D, G, J		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Fibrinogen Beta Chain Chain: B, E, H, K		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Fibrinogen, Gamma Polypeptide Chain: C, F, I, L		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Gly-Hydroxypro-Arg-Pro-Amide Peptide Ligand Chain: M, N, O, P, Q, R, S, T Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized.
symmetry	Space Group: P 1 2 1	R_factor 0.268 R_Free 0.347
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.647 47.069 431.460 90.00 90.06 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CA, HYP, NAG, NH2	enzyme
Gene Ontology	Chain Function Process Component A, J, D, G F, C, I, L K, E, B, H

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk] Biological Unit Coordinates (2hod.pdb1.gz) 116 Kb Biological Unit Coordinates (2hod.pdb2.gz) 115 Kb Biological Unit Coordinates (2hod.pdb3.gz) 117 Kb Biological Unit Coordinates (2hod.pdb4.gz) 116 Kb LPC: Ligand-Protein Contacts for 2HOD CSU: Contacts of Structural Units for 2HOD Likely Quarternary Molecular Structure file(s) for 2HOD Structure Factors (806 Kb) Retrieve 2HOD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HOD from S2C, [Save to disk] Re-refined 2hod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HOD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HOD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HOD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hod_M] [2hod_A] [2hod_K] [2hod_S] [2hod_E] [2hod_C] [2hod] [2hod_D] [2hod_R] [2hod_G] [2hod_F] [2hod_N] [2hod_B] [2hod_J] [2hod_P] [2hod_O] [2hod_I] [2hod_T] [2hod_H] [2hod_Q] [2hod_L] SWISS-PROT database: [P02671] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domain found in 2HOD: [FBG ] by SMART

Other resources with information on 2HOD

Community annotation for 2HOD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---