2I14 Transferase date Aug 12, 2006
title Crystal Structure Of Nicotinate-Nucleotide Pyrophosphorylase Pyrococcus Furiosus
authors D.H.Shin, R.Kim, S.H.Kim, Berkeley Structural Genomics Center
compound source
Molecule: Nicotinate-Nucleotide Pyrophosphorylase
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Gene: Pf1904
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3), Psjs1240
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pb4
symmetry Space Group: P 31
R_factor 0.247 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.481 111.481 178.263 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand PCP, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]
  • Biological Unit Coordinates (2i14.pdb1.gz) 368 Kb
  • LPC: Ligand-Protein Contacts for 2I14
  • CSU: Contacts of Structural Units for 2I14
  • Likely Quarternary Molecular Structure file(s) for 2I14
  • Structure Factors (698 Kb)
  • Retrieve 2I14 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I14 from S2C, [Save to disk]
  • Re-refined 2i14 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2I14 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2I14
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2I14, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i14_A] [2i14_C] [2i14_E] [2i14_B] [2i14] [2i14_D] [2i14_F]
  • SWISS-PROT database: [Q8TZS9]
  • Domain organization of [Q8TZS9_PYRFU] by SWISSPFAM
    • Other resources with information on 2I14
  • Community annotation for 2I14 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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