2J37 Ribosome date Aug 18, 2006
title Model Of Mammalian Srp Bound To 80s Rncs
authors M.Halic, M.Blau, T.Becker, T.Mielke, M.R.Pool, K.Wild, I.Sinning, R
compound source
Molecule: 60s Ribosomal Protein L23
Chain: 4
 Organism_scientific: Triticum Sp.
Organism_taxid: 4569

Molecule: Ribosomal Protein L35
Chain: 5
Organism_scientific: Triticum Sp.
Organism_common: Wheat
Organism_taxid: 4569

Molecule: Ribosomal Protein L31
Chain: 6
Organism_scientific: Triticum Sp
Organism_common: Wheat
Organism_taxid: 4569

Molecule: Srp Rna
Chain: A
Organism_scientific: Canis Sp.
Organism_taxid: 9616

Molecule: Signal Recognition Particle 19 Kda Protein (Srp19
Chain: B
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Signal Sequence
Chain: S
Organism_scientific: Canis Sp.
Organism_taxid: 9616

Molecule: Signal Recognition Particle 54 Kda Protein (Srp54
Chain: W
Organism_scientific: Canis Sp.
Organism_taxid: 9616

Molecule: Ribosomal Rna
Chain: Z
Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.00 Å
Gene
Ontology
ChainFunctionProcessComponent
4


5


6


B


W


Primary referenceFollowing the signal sequence from ribosomal tunnel exit to signal recognition particle., Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K, Sinning I, Beckmann R, Nature. 2006 Nov 23;444(7118):507-11. Epub 2006 Oct 29. PMID:17086193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (2j37.pdb1.gz) 288 Kb
  • CSU: Contacts of Structural Units for 2J37
  • Likely Quarternary Molecular Structure file(s) for 2J37
  • Retrieve 2J37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J37 from S2C, [Save to disk]
    • View 2J37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J37
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J37, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j37_4] [2j37_5] [2j37_B] [2j37_6] [2j37_W] [2j37_A] [2j37_Z] [2j37] [2j37_S]
  • SWISS-PROT database: [Q1WHN3] [Q8L805] [P09132] [P61010]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domain organization of [Q1WHN3_ALLSI] [RL35_WHEAT] [SRP19_HUMAN] [SRP54_CANFA] by SWISSPFAM
  • Domains found in 2J37: [AAA] [Ribosomal_L31e] [SRP54] [SRP54_N ] by SMART
    • Other resources with information on 2J37
  • Community annotation for 2J37 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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