2J61	Lectin	date	Sep 21, 2006
title	L-Ficolin Complexed To N-Acetylglucosamine (Forme C)
authors	V.Garlatti, C.Gaboriaud
compound		source
Molecule: Ficolin-2 Chain: A Fragment: Binding Domain, Residues 97-313 Synonym: Collagenfibrinogen Domain-Containing Protein 2, F Ficolin B, Serum Lectin P35, Ebp-37, Hucolin, L-Ficolin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Plasma Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_cell_line: High Five
Molecule: Ficolin-2 Chain: B Fragment: Binding Domain, Residues 97-313 Synonym: Collagenfibrinogen Domain-Containing Protein 2, F Ficolin B, Serum Lectin P35, Ebp-37, Hucolin, L-Ficolin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Plasma Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_cell_line: High Five
symmetry	Space Group: P 63	R_factor 0.207 R_Free 0.291
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.591 79.591 172.040 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CA, NAG	enzyme
Primary reference	Structural insights into the innate immune recognition specificities of L- and H-ficolins., Garlatti V, Belloy N, Martin L, Lacroix M, Matsushita M, Endo Y, Fujita T, Fontecilla-Camps JC, Arlaud GJ, Thielens NM, Gaboriaud C, EMBO J. 2007 Jan 24;26(2):623-33. Epub 2007 Jan 11. PMID:17215869

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (2j61.pdb1.gz) 37 Kb Biological Unit Coordinates (2j61.pdb2.gz) 37 Kb LPC: Ligand-Protein Contacts for 2J61 CSU: Contacts of Structural Units for 2J61 Likely Quarternary Molecular Structure file(s) for 2J61 Structure Factors (126 Kb) Retrieve 2J61 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J61 from S2C, [Save to disk] Re-refined 2j61 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J61 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J61

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J61, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j61] [2j61_B] [2j61_A] SWISS-PROT database: [Q15485] Domain organization of [FCN2_HUMAN] by SWISSPFAM Domain found in 2J61: [FBG ] by SMART

Other resources with information on 2J61

Community annotation for 2J61 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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