2J92 Hydrolase date Nov 01, 2006
title 3c Protease From Type A10(61) Foot-And-Mouth Disease Virus - Packing Mutant (K51q)
authors T.R.Sweeney, J.R.Birtley, R.J.Leatherbarrow, S.Curry
compound source
Molecule: Picornain 3c
Chain: A, B
Synonym: Protease 3c, P3c, Protease P20b, 3c Protease
Ec: 3.4.22.28
Engineered: Yes
Mutation: Yes
Other_details: K51q - To Disrupt Original Crystal Packing C Avoid Aggregation C142s - To Avoid Aggregation C163a - To R Acitve-Ste Nucleophile.
Organism_scientific: Foot-And-Mouth Disease Virus (Strain A
Organism_taxid: 12112
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Modified Petm-11
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.387 71.708 92.399 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.4.22.28 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and mutagenic analysis of foot-and-mouth disease virus 3C protease reveals the role of the beta-ribbon in proteolysis., Sweeney TR, Roque-Rosell N, Birtley JR, Leatherbarrow RJ, Curry S, J Virol. 2007 Jan;81(1):115-24. Epub 2006 Oct 25. PMID:17065215
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2j92.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (2j92.pdb2.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2J92
  • Structure Factors (151 Kb)
  • Retrieve 2J92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J92 from S2C, [Save to disk]
  • Re-refined 2j92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J92
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J92, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j92] [2j92_B] [2j92_A]
  • SWISS-PROT database: [P03306]
  • Domain organization of [POLG_FMDV1] by SWISSPFAM
  • Other resources with information on 2J92
  • Community annotation for 2J92 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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