2J9U	Protein Transport	date	Nov 16, 2006
title	Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C-Term Complex With The Nzf-N Domain From Escrt-II
authors	D.J.Gill, H.L.Teo, J.Sun, O.Perisic, D.B.Veprintsev, S.D.Emr, R.L.
compound		source
Molecule: Vacuolar Protein Sorting-Associated Protein 28 Chain: A, C Fragment: Residues 148-242 Synonym: Vps28 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: C41 Expression_system_plasmid: Popc
Molecule: Vacuolar Protein Sorting-Associated Protein 36 Chain: B, D Fragment: Residues 110-176 Synonym: Vps36 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: C41 Expression_system_plasmid: Popc
symmetry	Space Group: C 2 2 21	R_factor 0.223 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.645 99.961 115.619 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ZN	enzyme
note	2J9U is a representative structure
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structural insight into the ESCRT-I/-II link and its role in MVB trafficking., Gill DJ, Teo H, Sun J, Perisic O, Veprintsev DB, Emr SD, Williams RL, EMBO J. 2007 Jan 24;26(2):600-12. Epub 2007 Jan 11. PMID:17215868

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (2j9u.pdb1.gz) 24 Kb Biological Unit Coordinates (2j9u.pdb2.gz) 24 Kb LPC: Ligand-Protein Contacts for 2J9U CSU: Contacts of Structural Units for 2J9U Likely Quarternary Molecular Structure file(s) for 2J9U Structure Factors (648 Kb) Retrieve 2J9U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J9U from S2C, [Save to disk] Re-refined 2j9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J9U in 3D

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Visual 3D analysis of 2J9U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J9U, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j9u_C] [2j9u_A] [2j9u_D] [2j9u] [2j9u_B] SWISS-PROT database: [Q02767] [Q06696] Domain organization of [VPS28_YEAST] [VPS36_YEAST] by SWISSPFAM

Other resources with information on 2J9U

Community annotation for 2J9U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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