2JD4 Metal Binding Protein date Jan 04, 2007
title Mouse Laminin Alpha1 Chain, Domains Lg4-5
authors D.Harrison, S.A.Hussain, A.C.Combs, J.M.Ervasti, P.D.Yurchenco, E.Hohenester
compound source
Molecule: Laminin Subunit Alpha-1
Chain: A, B
Fragment: Domains Lg4-5, Residues 2706-3084
Synonym: Laminin Alpha1 Chain, Laminin A Chain
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: 293-Ebna
Expression_system_vector: Pcep-Pu
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.530 55.812 100.986 90.00 98.48 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, MG enzyme
Primary referenceCrystal structure and cell surface anchorage sites of laminin alpha1LG4-5., Harrison D, Hussain SA, Combs AC, Ervasti JM, Yurchenco PD, Hohenester E, J Biol Chem. 2007 Apr 13;282(15):11573-81. Epub 2007 Feb 15. PMID:17307732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (2jd4.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (2jd4.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 2JD4
  • CSU: Contacts of Structural Units for 2JD4
  • Likely Quarternary Molecular Structure file(s) for 2JD4
  • Structure Factors (431 Kb)
  • Retrieve 2JD4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JD4 from S2C, [Save to disk]
  • Re-refined 2jd4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JD4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JD4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JD4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jd4_B] [2jd4_A] [2jd4]
  • SWISS-PROT database: [P19137]
  • Domain organization of [LAMA1_MOUSE] by SWISSPFAM
  • Domain found in 2JD4: [LamG ] by SMART
  • Other resources with information on 2JD4
  • Community annotation for 2JD4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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