OCA Atlas for 2JD8

2JD8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FE, SO4, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
Q, R, T, 0, 4, W, H, B, F, Y, K, I, 7, N, 8, M, U, 5, C, D, 2, G, A, 6, 1, E, 3, J, S, P, Z, L, 9, V, X, O

Primary reference

Crystal structure of the ferritin from the hyperthermophilic archaeal anaerobe Pyrococcus furiosus., Tatur J, Hagen WR, Matias PM, J Biol Inorg Chem. 2007 Jun;12(5):615-30. Epub 2007 Feb 16. PMID:17541801

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1010 Kb) [Save to disk]

Biological Unit Coordinates (2jd8.pdb1.gz) 666 Kb

Biological Unit Coordinates (2jd8.pdb2.gz) 667 Kb

LPC: Ligand-Protein Contacts for 2JD8

CSU: Contacts of Structural Units for 2JD8

Retrieve 2JD8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2JD8 from S2C, [Save to disk]

View 2JD8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jd8] [2jd8_0] [2jd8_1] [2jd8_2] [2jd8_3] [2jd8_4] [2jd8_5] [2jd8_6] [2jd8_7] [2jd8_8] [2jd8_9] [2jd8_A] [2jd8_B] [2jd8_C] [2jd8_D] [2jd8_E] [2jd8_F] [2jd8_G] [2jd8_H] [2jd8_I] [2jd8_J] [2jd8_K] [2jd8_L] [2jd8_M] [2jd8_N] [2jd8_O] [2jd8_P] [2jd8_Q] [2jd8_R] [2jd8_S] [2jd8_T] [2jd8_U] [2jd8_V] [2jd8_W] [2jd8_X] [2jd8_Y] [2jd8_Z]

SWISS-PROT database: [Q8U2T8]

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