2JH8 Viral Protein date Feb 21, 2007
title The Structure Of Bluetongue Virus Vp4 Reveals A Multifunctio Capping Production-Line
authors G.Sutton, J.M.Grimes, D.I.Stuart, P.Roy
compound source
Molecule: Vp4 Core Protein
Chain: A
Synonym: Bluetongue Virus Vp4
Engineered: Yes
 Organism_scientific: Bluetongue Virus 10 (Isolate Usa)
Organism_taxid: 10900
Strain: Btv-10
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 65 2 2
R_factor 0.246 R_Free 0.341
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.055 75.055 419.834 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.22 Å
ligand GUN, M7G enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBluetongue virus VP4 is an RNA-capping assembly line., Sutton G, Grimes JM, Stuart DI, Roy P, Nat Struct Mol Biol. 2007 May;14(5):449-51. Epub 2007 Apr 8. PMID:17417654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (2jh8.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2JH8
  • CSU: Contacts of Structural Units for 2JH8
  • Likely Quarternary Molecular Structure file(s) for 2JH8
  • Structure Factors (166 Kb)
  • Retrieve 2JH8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JH8 from S2C, [Save to disk]
  • Re-refined 2jh8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JH8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JH8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JH8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jh8_A] [2jh8]
  • SWISS-PROT database: [P07132]
  • Domain organization of [VP4_BTV10] by SWISSPFAM
    • Other resources with information on 2JH8
  • Community annotation for 2JH8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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