2NVV Hydrolase date Nov 13, 2006
title Crystal Structure Of The Putative Acetyl-Coa Hydrolasetrans Pg1013 From Porphyromonas Gingivalis, Northeast Structural Target Pgr16.
authors F.Forouhar, H.Neely, J.Seetharaman, W.Yong, C.K.Ho, Y.Fang, K.Cunn L.C.Ma, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Monteli J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (N
compound source
Molecule: Acetyl-Coa Hydrolasetransferase Family Protein
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Porphyromonas Gingivalis
Organism_taxid: 242619
Strain: W83
Gene: Pg1013
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 32
R_factor 0.287 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.051 131.051 162.093 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand MSE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (455 Kb) [Save to disk]
  • Biological Unit Coordinates (2nvv.pdb1.gz) 154 Kb
  • Biological Unit Coordinates (2nvv.pdb2.gz) 154 Kb
  • Biological Unit Coordinates (2nvv.pdb3.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 2NVV
  • CSU: Contacts of Structural Units for 2NVV
  • Likely Quarternary Molecular Structure file(s) for 2NVV
  • Structure Factors (1469 Kb)
  • Retrieve 2NVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NVV from S2C, [Save to disk]
    • View 2NVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NVV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NVV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nvv_C] [2nvv_D] [2nvv_E] [2nvv_A] [2nvv_B] [2nvv_F] [2nvv]
  • SWISS-PROT database: [Q7MVN7]
  • Domain organization of [Q7MVN7_PORGI] by SWISSPFAM
    • Other resources with information on 2NVV
  • Community annotation for 2NVV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science