2OAW Structural Protein date Dec 18, 2006
title Structure Of Shh Variant Of "Bergerac" Chimera Of Spectrin S
authors A.G.Gabdoulkhakov, L.V.Gushchina, A.D.Nikulin, S.V.Nikonov, A.R. L.Serrano, V.V.Filimonov
compound source
Molecule: Spectrin Alpha Chain, Brain
Chain: A, B, C, D
Fragment: Sh3 Domain
Synonym: Spectrin, Non-Erythroid Alpha Chain, Fodrin Alpha
Engineered: Yes
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbat-4shh
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.470 57.550 101.390 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL enzyme
Primary referenceStructural and thermodynamic studies of Bergerac-SH3 chimeras., Gushchina LV, Gabdulkhakov AG, Nikonov SV, Mateo PL, Filimonov VV, Biophys Chem. 2009 Feb;139(2-3):106-15. Epub 2008 Nov 9. PMID:19042078
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (2oaw.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (2oaw.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (2oaw.pdb3.gz) 25 Kb
  • Biological Unit Coordinates (2oaw.pdb4.gz) 25 Kb
  • Biological Unit Coordinates (2oaw.pdb5.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 2OAW
  • CSU: Contacts of Structural Units for 2OAW
  • Likely Quarternary Molecular Structure file(s) for 2OAW
  • Structure Factors (341 Kb)
  • Retrieve 2OAW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OAW from S2C, [Save to disk]
  • Re-refined 2oaw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OAW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OAW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OAW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oaw] [2oaw_D] [2oaw_A] [2oaw_C] [2oaw_B]
  • SWISS-PROT database: [P07751]
  • Domain organization of [SPTA2_CHICK] by SWISSPFAM
  • Domain found in 2OAW: [SH3 ] by SMART
    • Other resources with information on 2OAW
  • Community annotation for 2OAW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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